Effective Molarity in

نویسندگان

  • Michael H. Mazor
  • Chung F. Wong
چکیده

Effective molarities for diffusion-controlled r actions between spherical reactants with reactive patches are calculated analytically and by Brownian dynamics simulations. Unimolecular reaction systems with internal translational motion in one, two, and three dimensions are investigated and compared with bimolecular reactions in three dimensions. Rotational diffusion is included in all cases in which a reactant particle is anisotropically reactive. Effective molarit ies are established bycalculating the ratio kunif k61. Large rate enhancements are seen when restrictive translational constraints are imposed on the unimolecular reaction. Additional rate enhancements occur when a reduction in dimensionality accompanies the translational constraint. If the reactants are anisotropically reactive, the effective molarity is further increased if the geometric onstraints in the unimolecular system keep the reactive surfaces in a proper orientation for reaction. The presence of an attractive potential designed to represent the relief of strain in the unimolecular system also leads to rate enhancements. The results are compared with those obtained for simple models of activated (non-diffusion-controlled) r actions. Overall, these simulation results indicate that highly elevated values of effective molarity are not likely to arise from mass transport considerations alone.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Effective molarity in a nucleic acid-controlled reaction.

Positioning of reactive functional groups within a DNA duplex can enable chemical reactions that otherwise would not occur to an appreciable extent. However, few studies have quantitatively defined the extent to which the enforced proximity of reaction partners in duplex DNA can favor chemical processes. Here, we measured substantial effective molarities (as high as 25M) afforded by duplex DNA ...

متن کامل

DNA-templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic molecules.

In contrast to the approach commonly taken by chemists, nature controls chemical reactivity by modulating the effective molarity of highly dilute reactants through macromolecule-templated synthesis. Nature's approach enables complex mixtures in a single solution to react with efficiencies and selectivities that cannot be achieved in conventional laboratory synthesis. DNA-templated organic synth...

متن کامل

Hemiacetal stabilization in a chymotrypsin inhibitor complex and the reactivity of the hydroxyl group of the catalytic serine residue of chymotrypsin.

The aldehyde inhibitor Z-Ala-Ala-Phe-CHO has been synthesized and shown by (13)C-NMR to react with the active site serine hydroxyl group of alpha-chymotrypsin to form two diastereomeric hemiacetals. For both hemiacetals oxyanion formation occurs with a pKa value of ~7 showing that chymotrypsin reduces the oxyanion pKa values by ~5.6 pKa units and stabilizes the oxyanions of both diastereoisomer...

متن کامل

Ordered Multistep Synthesis in a Single Solution Directed by DNA TemplatesFunding was generously provided by the NIH/NIGMS (R01[thinsp]M065865), the Office of Naval Research (N00014-03-1-0749), and an NSF Graduate Research Fellowship to T.M.S

The use of DNA templates to direct chemical reactions enables the principles of biological evolution to be applied to the discovery of synthetic molecules and new chemical reactions. In addition, the use of DNA hybridization to modulate the effective molarity of DNA-linked reactants allows synthetic molecules to be manipulated in ways that cannot be accessed using traditional synthetic methods....

متن کامل

Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: Diffusion, free energy of hydration, and structural properties

In this article we compare different force fields that are widely used (Gromacs, Charmm-22/x-Plor, Charmm-27, Amber-1999, OPLS-AA) in biophysical simulations containing aqueous NaCl. We show that the uncertainties of the microscopic parameters of, in particular, sodium, and, to a lesser extent, chloride, translate into large differences in the computed radial-distribution functions. This uncert...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2010